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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58532.1N-acetylmuramoyl-L-alanine amidase. (657 aa)    
Predicted Functional Partners:
KRN58814.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.968
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
 
 
 0.911
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
    
 0.903
KRN58858.1
Hypothetical protein.
 
 
 0.697
KRN58117.1
Kxykxgkxw signal domain protein.
   
 
 0.666
KRN59210.1
Peptidoglycan-binding LysM.
 
  
0.542
KRN58147.1
Membrane protein.
  
     0.534
KRN58684.1
Stage V sporulation protein D.
  
 0.525
KRN59586.1
KxYKxGKxW signal domain protein.
 
 
 0.525
KRN58165.1
Hypothetical protein; Belongs to the LOG family.
   
  0.524
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.