Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRN58532.1N-acetylmuramoyl-L-alanine amidase. (657 aa)    
Predicted Functional Partners:
KRN58814.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.984
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
    
 0.822
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
 
  
 0.782
KRN58858.1
Hypothetical protein.
 
  
 0.682
KRN59585.1
NLP P60 protein.
  
 
 0.581
KRN59210.1
Peptidoglycan-binding LysM.
    
 0.574
KRN58147.1
Membrane protein.
  
     0.534
KRN58165.1
Hypothetical protein; Belongs to the LOG family.
   
  0.514
KRN58137.1
Peptidase M23.
   
 
 0.507
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
   
  0.480
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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