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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58538.1Lipoprotein releasing system, ATP-binding protein. (226 aa)    
Predicted Functional Partners:
KRN58539.1
Peptide ABC transporter permease component.
 
 0.991
KRN58540.1
Hypothetical protein.
 
 
   0.920
KRN58537.1
Peptide ABC transporter permease and ATP-binding component.
 
 
0.918
KRN59466.1
Lipid A export permease ATP-binding protein MsbA.
     
0.900
KRN59465.1
Lipid A export permease ATP-binding protein MsbA.
     
0.859
KRN58188.1
Lipid A export permease ATP-binding protein MsbA.
     
0.840
KRN58189.1
Lipid A export permease ATP-binding protein MsbA.
     
0.819
KRN58556.1
ABC transporter permease.
 
  0.818
KRN58296.1
ABC superfamily ATP binding cassette transporter permease and substrate binding protein.
  
  0.773
KRN58235.1
Nodulation ABC transporter NodI.
 
  
  0.771
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.