Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KRN58606.1ABC transporter substrate-binding protein; Belongs to the nlpA lipoprotein family. (284 aa)    
Predicted Functional Partners:
metN
D-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.999
KRN58608.1
Binding-protein-dependent transport system inner membrane protein.
 0.999
KRN58339.1
Biotin carboxylase.
  
 0.782
KRN58609.1
Acetylornithine deacetylase (ArgE).
       0.658
KRN58173.1
ABC transporter permease component.
  
 
 0.477
KRN58215.1
Binding--dependent transport system inner membrane component family protein.
  
 
  0.409
KRN58217.1
Binding-protein-dependent transport systems inner membrane component.
  
 
  0.409
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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