Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
KRN58621.1Laci family transcriptional regulator. (335 aa)    
Predicted Functional Partners:
KRN58322.1
PTS system sucrose-specific IIABC component.
  
 
 0.832
KRN58634.1
PTS family porter enzyme II.
  
 
 0.832
KRN58529.1
Transcriptional regulator.
  
     0.773
KRN58111.1
Phosphocarrier protein HPr.
   
 
 0.592
KRN59601.1
Transcriptional regulator.
 
   
0.562
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
    
   0.464
KRN58442.1
Transketolase; Belongs to the transketolase family.
   
  0.424
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.411
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
   0.411
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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