Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN58624.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
KRN58623.1
Hypothetical protein.
 
    0.931
KRN58625.1
Glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
    
  0.796
KRN58622.1
Na galactoside symporter family permease.
 
    0.795
KRN58489.1
Hypothetical protein.
 
    0.726
KRN58488.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.669
KRN58515.1
Hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
 
     0.614
KRN58467.1
Fructuronate reductase.
 
  
  0.544
KRN58163.1
Oxidoreductase.
  
 
 0.506
KRN58403.1
L-ribulose-5-phosphate 4-epimerase.
    
 0.477
KRN58405.1
3-hexulose-6-phosphate synthase.
  
 
  0.467
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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