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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58624.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
KRN58623.1
Hypothetical protein.
 
    0.931
KRN58622.1
Na galactoside symporter family permease.
 
    0.797
KRN58625.1
Glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
       0.762
KRN58489.1
Hypothetical protein.
 
    0.725
KRN58163.1
Oxidoreductase.
  
 
 0.696
KRN58488.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.662
KRN58515.1
Hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
 
     0.606
KRN59576.1
Acetaldehyde dehydrogenase (acetylating); In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.524
KRN58448.1
Hypothetical protein.
  
     0.445
KRN59397.1
Kinase, PfkB family.
  
 
 0.445
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.