Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
KRN58625.1Glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family. (516 aa)    
Predicted Functional Partners:
KRN58624.1
Hypothetical protein.
    
  0.796
KRN58623.1
Hypothetical protein.
       0.759
KRN58622.1
Na galactoside symporter family permease.
  
    0.695
KRN58920.1
Xylose isomerase.
  
 
 0.579
KRN59348.1
Xylose isomerase.
  
 
 0.579
KRN58481.1
O-glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
 
 0.555
KRN58914.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.513
KRN58989.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.459
KRN58945.1
alpha-N-arabinofuranosidase.
  
 
 0.439
KRN58913.1
Hypothetical protein.
     
 0.414
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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