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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN58647.1Branched-chain amino acid transport. (135 aa)    
Predicted Functional Partners:
KRN58646.1
Azaleucine resistance protein AzlC.
 
  
 0.985
KRN58802.1
Hypothetical protein.
  
     0.771
KRN58435.1
Transcriptional regulator.
  
     0.674
KRN59056.1
Hypothetical protein.
  
     0.665
KRN58864.1
Hypothetical protein.
  
     0.653
KRN58648.1
Hypothetical protein.
       0.590
KRN58644.1
Phosphate regulon sensor kinase PhoR.
       0.581
KRN58645.1
D-alanyl-D-alanine carboxypeptidase dacA; Belongs to the peptidase S11 family.
       0.576
KRN58512.1
Hypothetical protein.
  
     0.555
KRN59127.1
Hypothetical protein.
  
     0.499
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.