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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59393.1Inosine-uridine nucleoside n-ribohydrolase. (315 aa)    
Predicted Functional Partners:
KRN58429.1
Pyrimidine-specific ribonucleoside hydrolase rihb.
 
 
 
0.838
KRN59343.1
Inosine-uridine preferring nucleoside hydrolase.
  
  
 
0.802
KRN59271.1
NAD-dependent deacetylase (regulatory protein SIR2 family protein).
   
 
  0.798
KRN59234.1
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.797
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
 0.656
KRN59394.1
Alcohol dehydrogenase, iron-dependent.
  
    0.645
KRN59397.1
Kinase, PfkB family.
 
 
  0.642
udk
Uridine kinase.
   
 0.629
KRN59395.1
Membrane protein.
       0.593
pyrR
Pyrimidine operon regulator; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.
   
 
  0.558
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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