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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59394.1Alcohol dehydrogenase, iron-dependent. (379 aa)    
Predicted Functional Partners:
trpF
N-(5phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
 
    0.842
KRN58282.1
Mycothiol-dependent formaldehyde dehydrogenase.
  
 0.826
KRN58323.1
Alcohol dehydrogenase.
  
 0.817
KRN59395.1
Membrane protein.
 
     0.805
KRN59576.1
Acetaldehyde dehydrogenase (acetylating); In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
0.767
KRN59397.1
Kinase, PfkB family.
 
 
 
 0.730
KRN59393.1
Inosine-uridine nucleoside n-ribohydrolase.
  
    0.645
KRN59398.1
HTH domain protein.
 
 
 
 0.601
KRN58322.1
PTS system sucrose-specific IIABC component.
   
  
 0.563
KRN58634.1
PTS family porter enzyme II.
   
  
 0.563
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.