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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59398.1HTH domain protein. (357 aa)    
Predicted Functional Partners:
trpF
N-(5phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
 
  
  0.896
KRN59576.1
Acetaldehyde dehydrogenase (acetylating); In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.893
KRN58322.1
PTS system sucrose-specific IIABC component.
  
 
 0.838
KRN58634.1
PTS family porter enzyme II.
  
 
 0.838
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
  
 
 0.795
KRN59397.1
Kinase, PfkB family.
 
  
 
0.791
KRN59395.1
Membrane protein.
 
     0.769
KRN59101.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.707
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.696
KRN58900.1
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.621
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.