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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59419.1Glutamine ABC transporter substrate binding component. (281 aa)    
Predicted Functional Partners:
KRN59421.1
Ectoine hydroxyectoine ABC transporter, permease EhuD.
 0.998
KRN59420.1
Glutamine ABC transporter ATP-binding component.
 
 0.981
KRN59217.1
Glutamate ABC transporter permease.
  0.980
KRN59295.1
Polar amino acid ABC transporter inner membrane protein.
 0.957
KRN58811.1
ABC transporter permease component.
 0.817
KRN58810.1
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
 0.800
KRN58734.1
Ectoine hydroxyectoine ABC transporter, ATP-binding protein.
 
 0.761
KRN58606.1
ABC transporter substrate-binding protein; Belongs to the nlpA lipoprotein family.
  
  
 0.697
KRN58809.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.688
KRN59296.1
Atp-binding protein-like protein.
 
 0.619
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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