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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59490.1Peptidase M10A and M12B matrixin and adamalysin. (233 aa)    
Predicted Functional Partners:
KRN59491.1
Hypothetical protein.
       0.642
KRN59049.1
Hypothetical protein.
  
     0.625
KRN59194.1
Hypothetical protein.
  
     0.547
KRN58906.1
Hypothetical protein.
  
     0.547
KRN59014.1
Hypothetical protein.
  
     0.529
KRN58414.1
Phosphoesterase.
  
     0.516
KRN58910.1
Hypothetical protein.
  
     0.493
KRN59489.1
Aldo keto reductase.
       0.486
KRN58377.1
Two-component system histidine kinase.
  
     0.460
KRN58374.1
Gtp-pyrophosphokinase.
  
    0.449
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.