STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59519.1Hypothetical protein. (192 aa)    
Predicted Functional Partners:
KRN59255.1
Hypothetical protein.
  
    0.804
KRN58709.1
Hypothetical protein.
  
     0.699
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.671
KRN58393.1
Hypothetical protein.
  
     0.653
KRN59438.1
Hypothetical protein.
  
     0.628
KRN59517.1
Phosphate acetyltransferase.
       0.619
KRN58164.1
Hypothetical protein.
  
     0.610
KRN59516.1
Hypothetical protein.
       0.601
KRN59515.1
Hypothetical protein.
       0.542
KRN59174.1
Hypothetical protein.
  
     0.482
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.