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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59586.1KxYKxGKxW signal domain protein. (845 aa)    
Predicted Functional Partners:
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
    
  0.915
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
    
  0.897
KRN59585.1
NLP P60 protein.
 
 
 
0.805
KRN58139.1
Hypothetical protein.
  
     0.757
KRN58270.1
Hypothetical protein.
  
     0.754
KRN58136.1
Hypothetical protein.
 
 
0.643
KRN59622.1
Hypothetical protein.
  
     0.611
KRN59243.1
Hypothetical protein.
  
     0.588
KRN59597.1
Transcriptional regulator, AraC family.
  
     0.562
KRN58532.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.525
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.