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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59601.1Transcriptional regulator. (309 aa)    
Predicted Functional Partners:
KRN58322.1
PTS system sucrose-specific IIABC component.
  
 
 0.893
KRN58634.1
PTS family porter enzyme II.
  
 
 0.893
KRN58507.1
Galactose operon repressor.
  
     0.769
KRN58990.1
Arabinose metabolism transcriptional repressor.
  
     0.698
KRN58111.1
Phosphocarrier protein HPr.
   
 
 0.649
KRN58621.1
Laci family transcriptional regulator.
 
   
0.607
KRN58936.1
Transcriptional regulator, LacI family.
 
   
0.606
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
    
   0.584
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.560
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
   0.560
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.