STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59613.1Glycoside hydrolase family 2 TIM barrel. (626 aa)    
Predicted Functional Partners:
KRN59612.1
Beta galactosidase small subunit.
 
 0.998
KRN58392.1
Galactose mutarotase; Catalyzes the interconversion of alpha and beta anomers of maltose.
  
 
 0.620
KRN58481.1
O-glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
  
 
  0.544
KRN59133.1
Glucokinase.
     
 0.538
KRN58970.1
Beta-galactosidase.
   
 0.534
KRN58971.1
Beta-galactosidase.
   
 0.534
KRN59610.1
Hypothetical protein.
   
  0.530
KRN59609.1
Peptidase M1 membrane alanine aminopeptidase.
     
 0.505
gpmA-2
Alpha-ribazole phosphatase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.497
uxaC
Glucuronate isomerase.
  
 
 0.469
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.