Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN59291.1Hypothetical protein. (106 aa)    
Predicted Functional Partners:
KRN58195.1
Hypothetical protein.
 
     0.715
KRN59292.1
Recombination ATPase.
       0.689
KRN59290.1
Kxykxgkxw signal domain protein.
       0.551
KRN58993.1
Hypothetical protein.
 
     0.432
KRN59216.1
Anaerobic ribonucleoside-triphosphate reductase.
    
  0.424
KRN58722.1
ComE operon protein 2.
    
  0.400
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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