STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59296.1Atp-binding protein-like protein. (248 aa)    
Predicted Functional Partners:
KRN59295.1
Polar amino acid ABC transporter inner membrane protein.
  0.999
KRN59217.1
Glutamate ABC transporter permease.
 0.994
KRN59421.1
Ectoine hydroxyectoine ABC transporter, permease EhuD.
  0.990
KRN59297.1
High affinity cystine binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
  0.989
KRN59300.1
L-cystine ABC superfamily ATP binding cassette transporter, binding protein YckK; Belongs to the bacterial solute-binding protein 3 family.
 
  0.962
KRN59218.1
Amino acid ABC transporter.
 
 0.937
KRN58810.1
Amino acid ABC superfamily ATP binding cassette transporter, membrane protein.
  0.926
KRN58811.1
ABC transporter permease component.
  0.900
KRN58189.1
Lipid A export permease ATP-binding protein MsbA.
 
     
0.893
KRN59466.1
Lipid A export permease ATP-binding protein MsbA.
 
     
0.886
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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