STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN59330.1Hypothetical protein; Belongs to the UPF0255 family. (390 aa)    
Predicted Functional Partners:
KRN59329.1
Hypothetical protein.
 
     0.934
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
  
 
  0.910
KRN59331.1
RND superfamily resistance-nodulation-cell division proton (H+) antiporter.
 
     0.909
guaA
GMP synthase domain-containing protein; Catalyzes the synthesis of GMP from XMP.
    
  0.882
KRN59332.1
TetR protein.
 
     0.763
KRN58198.1
Transcriptional regulator, TetR family.
  
     0.670
KRN58322.1
PTS system sucrose-specific IIABC component.
    
 
 0.663
KRN58634.1
PTS family porter enzyme II.
    
 
 0.663
KRN59063.1
Hypothetical protein.
  
     0.502
KRN58943.1
LPXTG-motif cell wall anchor domain protein.
  
     0.496
Your Current Organism:
Lactobacillus secaliphilus
NCBI taxonomy Id: 396268
Other names: CCUG 53218, DSM 17896, JCM 15613, L. secaliphilus, Lactobacillus secaliphilus Ehrmann et al. 2007
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.