STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_1250KEGG: aeh:Mlg_1233 hypothetical protein. (228 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.928
Tgr7_2907
KEGG: aeh:Mlg_0352 hypothetical protein.
 
     0.784
Tgr7_2908
PFAM: Heptaprenyl diphosphate synthase component I; KEGG: aeh:Mlg_0351 heptaprenyl diphosphate synthase component I.
 
     0.765
Tgr7_3127
PFAM: porin Gram-negative type; KEGG: abo:ABO_2163 hypothetical protein.
  
     0.746
Tgr7_1249
KEGG: pmy:Pmen_2718 Tfp pilus assembly protein FimV-like protein.
 
     0.692
cysG
uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.584
Tgr7_3177
Conserved hypothetical protein; KEGG: mxa:MXAN_0861 CHAD domain protein.
 
     0.497
Tgr7_2505
KEGG: hha:Hhal_2334 YfaZ family protein.
  
     0.483
Tgr7_2448
KEGG: noc:Noc_2348 hypothetical protein.
  
     0.463
Tgr7_2403
KEGG: xca:xccb100_4124 bifunctional protein BirA.
     
 0.457
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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