STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_1497PFAM: protein of unknown function DUF330; KEGG: pnu:Pnuc_1071 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Tgr7_1496
PFAM: Mammalian cell entry related domain protein; KEGG: pca:Pcar_2751 paraquat-inducible ABC-type transporter, periplasmic component.
 
     0.947
Tgr7_1495
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2750 ABC-type transport system, ATPase component.
 
     0.850
Tgr7_1494
Protein of unknown function DUF140; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; protein of unknown function DUF140; KEGG: pca:Pcar_2749 ABC-type transport system, permease component.
 
     0.818
Tgr7_1493
KEGG: atc:AGR_C_414 hypothetical protein.
 
     0.549
Tgr7_2107
KEGG: rca:Rcas_3653 hypothetical protein.
  
     0.514
Tgr7_1490
KEGG: pae:PA2874 hypothetical protein.
 
     0.502
Tgr7_1489
KEGG: aeh:Mlg_1885 transglutaminase domain-containing protein.
 
     0.480
Tgr7_1492
KEGG: mmw:Mmwyl1_3133 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.479
Tgr7_1212
KEGG: net:Neut_2438 FlgN family protein.
  
     0.462
Tgr7_0607
KEGG: aeh:Mlg_1614 site-specific recombinase.
  
     0.457
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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