STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_1513Hypothetical protein; KEGG: mgm:Mmc1_1169 poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. (366 aa)    
Predicted Functional Partners:
Tgr7_1512
KEGG: mgm:Mmc1_1170 poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit.
 
  
 0.996
Tgr7_1515
TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cvi:CV_2364 acetoacetyl-CoA reductase.
 
  
 0.958
Tgr7_1519
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xcv:XCV2598 acetoacetyl-CoA reductase.
  
  
 0.939
Tgr7_1516
TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: smt:Smal_2751 polyhydroxyalkonate synthesis repressor, PhaR.
 
   
 0.763
Tgr7_1514
KEGG: mgm:Mmc1_1165 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.622
Tgr7_2448
KEGG: noc:Noc_2348 hypothetical protein.
  
     0.606
Tgr7_3127
PFAM: porin Gram-negative type; KEGG: abo:ABO_2163 hypothetical protein.
  
     0.554
Tgr7_1197
KEGG: tbd:Tbd_2599 hypothetical protein.
  
     0.542
Tgr7_2537
KEGG: aeh:Mlg_0607 hypothetical protein.
  
     0.538
Tgr7_0320
KEGG: noc:Noc_2127 hypothetical protein.
  
     0.483
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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