STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_1607PFAM: LemA family protein; KEGG: aeh:Mlg_1468 LemA family protein. (196 aa)    
Predicted Functional Partners:
Tgr7_1608
PFAM: peptidase M48 Ste24p; KEGG: aeh:Mlg_0820 peptidase M48, Ste24p.
 
    0.959
Tgr7_1606
KEGG: mgm:Mmc1_1408 hypothetical protein.
       0.527
Tgr7_1605
KEGG: pfo:Pfl01_3114 putative periplasmic protease.
       0.428
Tgr7_1609
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: abo:ABO_2581 AcrR transcription regulator family protein.
       0.418
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.