STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_2198PFAM: HesB/YadR/YfhF-family protein; KEGG: tbd:Tbd_2472 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Tgr7_2196
PFAM: Polysulphide reductase NrfD; KEGG: vok:COSY_0784 intracellular sulfur oxidation protein DsrP.
 
     0.816
Tgr7_2194
KEGG: tbd:Tbd_2476 hypothetical protein.
 
   
 0.796
cbiA
Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
   
 0.735
Tgr7_2182
KEGG: aeh:Mlg_1650 hypothetical protein.
 
     0.714
hscB
Co-chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.
 
 
 0.698
Tgr7_2178
KEGG: tbd:Tbd_2490 hypothetical protein.
  
     0.682
Tgr7_2184
KEGG: mag:amb3366 taurine catabolism dioxygenase.
 
     0.660
Tgr7_2193
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1661 putative glutamate synthase (NADPH) small subunit.
 
   
 0.653
Tgr7_1404
KEGG: tbd:Tbd_0600 hypothetical protein.
  
     0.630
Tgr7_2195
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aeh:Mlg_1663 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.619
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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