STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tgr7_2734KEGG: dar:Daro_3543 glycosyl transferase, group 1. (403 aa)    
Predicted Functional Partners:
Tgr7_2752
KEGG: maq:Maqu_0142 metallophosphoesterase.
     0.921
Tgr7_2733
KEGG: smt:Smal_0817 phosphoesterase PA-phosphatase related.
 
  
 0.893
Tgr7_2736
KEGG: maq:Maqu_2322 putative hemolysin.
 
    0.845
Tgr7_2735
KEGG: pmy:Pmen_1125 lyso-ornithine lipid acyltransferase.
       0.823
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.534
Tgr7_2083
KEGG: mmw:Mmwyl1_0842 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.503
Tgr7_2400
KEGG: noc:Noc_1999 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.503
Tgr7_2737
KEGG: afe:Lferr_0687 rhodanese domain protein.
       0.462
Tgr7_2339
Nucleotide sugar dehydrogenase; KEGG: mca:MCA2487 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.444
Tgr7_2738
PFAM: beta-lactamase domain protein; KEGG: pmy:Pmen_1128 beta-lactamase domain-containing protein.
 
     0.436
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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