STRINGSTRING
cbbL protein (Thioalkalivibrio sulfidiphilus) - STRING interaction network
"cbbL" - Ribulose bisphosphate carboxylase large chain in Thioalkalivibrio sulfidiphilus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbLRibulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily (473 aa)    
Predicted Functional Partners:
Tgr7_3202
KEGG- nwi-Nwi_1986 ribulose bisphosphate carboxylase, small chain (110 aa)
 
  0.998
Tgr7_3240
PFAM- phosphoribulokinase/uridine kinase; KEGG- tbd-Tbd_2447 phosphoribulokinase (296 aa)
 
   
  0.980
pgk
KEGG- aeh-Mlg_2842 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family (392 aa)
       
  0.919
gph
KEGG- tcx-Tcr_0265 phosphoglycolate phosphatase (226 aa)
       
  0.918
Tgr7_1355
TIGRFAM- HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM- Haloacid dehalogenase domain protein hydrolase; KEGG- noc-Noc_0178 HAD family hydrolase (228 aa)
       
  0.907
eno
Enolase; Catalyzes the reversible conversion of 2- phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis (426 aa)
         
  0.906
Tgr7_3178
PFAM- Pyruvate kinase barrel; KEGG- afe-Lferr_0897 pyruvate kinase (632 aa)
         
  0.901
Tgr7_2890
KEGG- noc-Noc_2805 pyruvate kinase; Belongs to the pyruvate kinase family (480 aa)
         
  0.901
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (516 aa)
         
  0.900
Tgr7_0639
PFAM- Phosphoglycerate mutase; KEGG- tbd-Tbd_1121 alpha-ribazole-5`-phosphate phosphatase CobC, putative (193 aa)
       
    0.900
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
Server load: low (6%) [HD]