STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_0856TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ote:Oter_3803 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (370 aa)    
Predicted Functional Partners:
TK90_0857
PFAM: acriflavin resistance protein; KEGG: gur:Gura_0528 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.995
TK90_2321
PFAM: acriflavin resistance protein; KEGG: pla:Plav_0175 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  0.981
TK90_1621
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pmy:Pmen_0826 hydrophobe/amphiphile efflux-1 (HAE1) family protein.
 
  0.962
TK90_2457
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: noc:Noc_2616 type I secretion outer membrane protein, TolC.
 
 0.950
TK90_1351
PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_0651 outer membrane efflux protein.
  
  0.926
TK90_1620
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_1407 RND efflux system outer membrane lipoprotein.
  
  0.859
TK90_1919
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: aeh:Mlg_1407 RND efflux system outer membrane lipoprotein.
  
  0.859
TK90_0855
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: abo:ABO_2581 AcrR transcription regulator family protein.
 
     0.816
TK90_2063
PFAM: protein of unknown function DUF214; KEGG: hha:Hhal_1917 hypothetical protein.
  
 
 0.740
TK90_1350
PFAM: acriflavin resistance protein; KEGG: aeh:Mlg_0652 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.689
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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