STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_1010PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2567 short chain dehydrogenase. (254 aa)    
Predicted Functional Partners:
TK90_1011
PFAM: FAD linked oxidase domain protein; KEGG: sml:Smlt0633 putative FAD-binding oxidoreductase.
 
   
 0.960
TK90_1013
PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase; Belongs to the UbiA prenyltransferase family.
 
   
 0.958
TK90_1012
PFAM: conserved hypothetical protein; KEGG: psb:Psyr_2300 hypothetical protein.
 
     0.945
TK90_1009
TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); KEGG: noc:Noc_1949 HAD family hydrolase.
 
     0.881
TK90_1008
KEGG: mms:mma_3343 hypothetical protein.
 
     0.815
TK90_1014
KEGG: lbf:LBF_0241 hypothetical protein.
       0.511
TK90_1007
PFAM: Invasion associated locus B family protein; KEGG: oan:Oant_0441 invasion associated locus B family protein.
       0.506
TK90_0999
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I).
       0.442
TK90_1000
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: psa:PST_0384 putative NADH dehydrogenase I chain M.
       0.442
TK90_1001
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone).
       0.442
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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