STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_1088PFAM: protein of unknown function DUF1538; KEGG: aeh:Mlg_0659 hypothetical protein. (506 aa)    
Predicted Functional Partners:
TK90_1089
KEGG: aeh:Mlg_0660 hypothetical protein.
 
     0.961
TK90_1090
Putative signal transduction protein with CBS domains; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; KEGG: aeh:Mlg_0661 signal-transduction protein.
 
     0.951
TK90_1830
KEGG: app:CAP2UW1_0055 hypothetical protein.
 
     0.786
TK90_2284
PFAM: phosphoribosyltransferase; KEGG: avn:Avin_05970 amidophosphoribosyltransferase.
   
    0.598
TK90_1091
KEGG: aeh:Mlg_2511 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
  
    0.595
TK90_1087
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_91 hypothetical protein.
       0.557
TK90_1107
PFAM: protein of unknown function DUF159; KEGG: aeh:Mlg_2142 hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.525
TK90_1061
KEGG: sru:SRU_0809 hypothetical protein.
  
     0.513
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
  
    0.445
TK90_2434
KEGG: aeh:Mlg_0973 hypothetical protein.
  
     0.441
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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