STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_1233Hypothetical protein; KEGG: pzu:PHZ_c1115 penicillin-binding protein, 1A family. (74 aa)    
Predicted Functional Partners:
TK90_1234
KEGG: azo:azo1869 hypothetical protein.
       0.773
TK90_1231
KEGG: ecv:APECO1_4029 hypothetical protein.
       0.727
TK90_1232
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
       0.727
TK90_1235
ATPase AAA-2; KEGG: jan:Jann_3987 ATPase AAA-2.
       0.550
TK90_1236
KEGG: rsp:RSP_2756 hypothetical protein.
       0.529
TK90_1229
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: msl:Msil_1535 phage transcriptional regulator, AlpA.
       0.419
TK90_1230
Hypothetical protein.
       0.419
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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