STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_1674PFAM: 20S proteasome A and B subunits; KEGG: mca:MCA2055 hypothetical protein. (281 aa)    
Predicted Functional Partners:
TK90_1675
PFAM: protein of unknown function DUF403; KEGG: maq:Maqu_3034 hypothetical protein.
 
    0.787
TK90_1676
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: maq:Maqu_3035 hypothetical protein.
 
  
 0.777
TK90_1037
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: scl:sce0813 transglutaminase-like enzymes, putative cysteine proteases.
 
    0.548
TK90_1673
Putative phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; KEGG: rxy:Rxyl_0931 hypothetical protein.
       0.527
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.