STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_1993Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: hna:Hneap_0637 transcriptional regulator, LysR family. (319 aa)    
Predicted Functional Partners:
TK90_1991
KEGG: tbd:Tbd_1716 hypothetical protein.
 
     0.889
TK90_1990
PFAM: protein of unknown function UPF0118; KEGG: aeh:Mlg_2482 hypothetical protein.
       0.836
TK90_1992
KEGG: afr:AFE_2530 hypothetical protein.
       0.829
TK90_0265
PFAM: glutamate synthase; ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; KEGG: aeh:Mlg_2763 glutamate synthase subunit alpha.
     
 0.596
TK90_1989
Ribonuclease, Rne/Rng family; KEGG: aeh:Mlg_0409 ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.
   
   0.580
TK90_1994
KEGG: har:HEAR2987 hypothetical protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.
       0.505
TK90_1026
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
   
 0.447
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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