node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplQ | rpmJ | TK90_2143 | TK90_2148 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 0.998 |
rplQ | rpsB | TK90_2143 | TK90_1497 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: tcx:Tcr_1285 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
rplQ | rpsD | TK90_2143 | TK90_2145 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplQ | rpsE | TK90_2143 | TK90_2152 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplQ | rpsF | TK90_2143 | TK90_1935 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.997 |
rplQ | rpsI | TK90_2143 | TK90_0542 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | PFAM: ribosomal protein S9; KEGG: xac:XAC0488 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
rplQ | rpsK | TK90_2143 | TK90_2146 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplQ | rpsM | TK90_2143 | TK90_2147 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplQ | rpsO | TK90_2143 | TK90_0728 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
rplQ | secY | TK90_2143 | TK90_2149 | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.989 |
rpmJ | rplQ | TK90_2148 | TK90_2143 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: amc:MADE_00964 50S ribosomal protein L17. | 0.998 |
rpmJ | rpsB | TK90_2148 | TK90_1497 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: tcx:Tcr_1285 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.988 |
rpmJ | rpsD | TK90_2148 | TK90_2145 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rpmJ | rpsE | TK90_2148 | TK90_2152 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rpmJ | rpsF | TK90_2148 | TK90_1935 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.995 |
rpmJ | rpsI | TK90_2148 | TK90_0542 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | PFAM: ribosomal protein S9; KEGG: xac:XAC0488 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.972 |
rpmJ | rpsK | TK90_2148 | TK90_2146 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rpmJ | rpsM | TK90_2148 | TK90_2147 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rpmJ | rpsO | TK90_2148 | TK90_0728 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.985 |
rpmJ | secY | TK90_2148 | TK90_2149 | TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aeh:Mlg_0479 50S ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.996 |