STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_2375PFAM: protein of unknown function DUF1007; KEGG: csa:Csal_3209 hypothetical protein. (221 aa)    
Predicted Functional Partners:
TK90_0674
PFAM: high-affinity nickel-transporter; KEGG: sme:SMc02986 hypothetical protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
 
     0.786
TK90_2376
PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: smt:Smal_0697 5'-3' exonuclease.
       0.779
TK90_2374
PFAM: pseudouridine synthase; KEGG: amc:MADE_02367 ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family.
       0.778
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
       0.775
TK90_0789
KEGG: csa:Csal_2145 hypothetical protein.
  
     0.619
TK90_1738
PFAM: cyclase/dehydrase; KEGG: cti:RALTA_B1222 putative cyclase/dehydrase; putatively involved in polyketide (linear poly-beta-ketones) synthesis; antibiotic biosynthesis.
  
     0.579
TK90_2373
PFAM: Lytic transglycosylase catalytic; KEGG: dba:Dbac_1892 lytic transglycosylase catalytic.
 
     0.555
TK90_1007
PFAM: Invasion associated locus B family protein; KEGG: oan:Oant_0441 invasion associated locus B family protein.
  
     0.513
TK90_2378
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: hch:HCH_05974 malic enzyme.
       0.508
TK90_2380
PFAM: nuclease (SNase domain protein); KEGG: pag:PLES_54381 putative nuclease.
 
     0.491
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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