STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TK90_2565PFAM: Citrate transporter; TrkA-C domain protein; KEGG: dsh:Dshi_0233 citrate transporter. (612 aa)    
Predicted Functional Partners:
TK90_2564
PFAM: UspA domain protein; KEGG: tbd:Tbd_2614 universal stress protein.
  
  
 0.780
TK90_2566
PFAM: phosphoribulokinase/uridine kinase; KEGG: hna:Hneap_0561 phosphoribulokinase.
       0.640
TK90_0364
TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: aha:AHA_1269 putative K+-dependent Na+/Ca+ exchanger-like protein.
 
   
 0.590
TK90_0756
Transcriptional regulator, ArsR family; PFAM: Rhodanese domain protein; regulatory protein ArsR; SMART: regulatory protein ArsR; Rhodanese domain protein; KEGG: reh:H16_A2208 ArsR family transcriptional regulator.
  
  
 0.589
TK90_0748
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: aeh:Mlg_2090 putative monovalent cation/H+ antiporter subunit A.
     
 0.577
TK90_1410
Dual specificity protein phosphatase; KEGG: rpe:RPE_4503 ADP-ribosylation/crystallin J1.
     
 0.563
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
    0.551
TK90_2378
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: hch:HCH_05974 malic enzyme.
  
  
 0.535
TK90_0489
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; PAS fold-4 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.530
TK90_1026
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: nmu:Nmul_A0328 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
  
 0.530
Your Current Organism:
Thioalkalivibrio sp. K90mix
NCBI taxonomy Id: 396595
Other names: T. sp. K90mix
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