CIHG_02196 protein (Coccidioides immitis H5384)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CIHG_02196

Sep4a. (186 aa)

Predicted Functional Partners:

CIHG_02197

0.898

CIHG_04181

0.828

CIHG_08978

0.799

CIHG_07256

0.742

CIHG_00429

0.677

CIHG_08920

0.612

CIHG_06332

0.492

CIHG_04496

0.481

CIHG_04498

0.481

CIHG_04497

0.481

Your Current Organism:

Coccidioides immitis H5384

NCBI taxonomy Id: 396776
Other names: C. immitis H538.4, Coccidioides immitis H538.4

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIHG_00429	CIHG_02196	A0A0J8U6M1	A0A0J8RID3	Uncharacterized protein.	Sep4a.	0.677
CIHG_00429	CIHG_02197	A0A0J8U6M1	A0A0J8RHP9	Uncharacterized protein.	Uncharacterized protein.	0.677
CIHG_00429	CIHG_04496	A0A0J8U6M1	A0A0J8RPH4	Uncharacterized protein.	Spindle assembly checkpoint kinase.	0.516
CIHG_00429	CIHG_04497	A0A0J8U6M1	A0A0J8UH10	Uncharacterized protein.	Hormonally up-regulated neu tumor-associated kinase.	0.516
CIHG_00429	CIHG_04498	A0A0J8U6M1	A0A0J8RRY1	Uncharacterized protein.	Uncharacterized protein.	0.516
CIHG_00429	CIHG_07256	A0A0J8U6M1	A0A0J8RZ53	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.672
CIHG_02196	CIHG_00429	A0A0J8RID3	A0A0J8U6M1	Sep4a.	Uncharacterized protein.	0.677
CIHG_02196	CIHG_02197	A0A0J8RID3	A0A0J8RHP9	Sep4a.	Uncharacterized protein.	0.898
CIHG_02196	CIHG_04181	A0A0J8RID3	A0A0J8RNK1	Sep4a.	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.828
CIHG_02196	CIHG_04496	A0A0J8RID3	A0A0J8RPH4	Sep4a.	Spindle assembly checkpoint kinase.	0.481
CIHG_02196	CIHG_04497	A0A0J8RID3	A0A0J8UH10	Sep4a.	Hormonally up-regulated neu tumor-associated kinase.	0.481
CIHG_02196	CIHG_04498	A0A0J8RID3	A0A0J8RRY1	Sep4a.	Uncharacterized protein.	0.481
CIHG_02196	CIHG_06332	A0A0J8RID3	A0A0J8RUU1	Sep4a.	Elongation factor 3.	0.492
CIHG_02196	CIHG_07256	A0A0J8RID3	A0A0J8RZ53	Sep4a.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.742
CIHG_02196	CIHG_08920	A0A0J8RID3	A0A0J8S2Y0	Sep4a.	Elongation factor 3.	0.612
CIHG_02196	CIHG_08978	A0A0J8RID3	A0A0J8UTI2	Sep4a.	Septin-9; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.799
CIHG_02197	CIHG_00429	A0A0J8RHP9	A0A0J8U6M1	Uncharacterized protein.	Uncharacterized protein.	0.677
CIHG_02197	CIHG_02196	A0A0J8RHP9	A0A0J8RID3	Uncharacterized protein.	Sep4a.	0.898
CIHG_02197	CIHG_04181	A0A0J8RHP9	A0A0J8RNK1	Uncharacterized protein.	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.828
CIHG_02197	CIHG_04496	A0A0J8RHP9	A0A0J8RPH4	Uncharacterized protein.	Spindle assembly checkpoint kinase.	0.481