STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIHG_05838DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (77 aa)    
Predicted Functional Partners:
CIHG_09611
DNA damage binding protein 1b.
    
 0.969
CIHG_05839
Uncharacterized protein.
 
     0.919
CIHG_07073
Cullin-4B; Belongs to the cullin family.
    
 0.913
CIHG_02708
RING-box protein 1.
    
 0.842
CIHG_05126
Replication protein A 32 kDa subunit.
    
 0.839
CIHG_04788
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.818
CIHG_03474
COP9 signalosome complex subunit 5.
    
 0.812
CIHG_08021
CSN8_PSD8_EIF3K domain-containing protein.
    
 0.792
CIHG_02319
COP9 signalosome complex subunit 2.
    
 0.788
CIHG_01606
DNA repair protein rhp42.
   
 0.786
Your Current Organism:
Coccidioides immitis H5384
NCBI taxonomy Id: 396776
Other names: C. immitis H538.4, Coccidioides immitis H538.4
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