Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORB20455.1RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)    
Predicted Functional Partners:
ORB20419.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.921
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.791
ORB21284.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.781
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.764
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.682
ORB20417.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
ORB20418.1
YfcE family phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
ORB19213.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.644
ORB26966.1
Protein-glutamate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.608
ORB20420.1
DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.589
Your Current Organism:
Mycolicibacterium moriokaense
NCBI taxonomy Id: 39691
Other names: ATCC 43059, CCUG 37671, CIP 105393, DSM 44221, JCM 6375, M. moriokaense, Mycobacterium moriokaense, NCH E11715
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