Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORB32244.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
ORB32439.1
DUF3298 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ssp5
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
ORB31531.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
ORB25322.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
ORB31726.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
ORB30440.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
ORB29384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
ORB25258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.743
ORB30933.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
ORB32441.1
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
Your Current Organism:
Mycolicibacterium parafortuitum
NCBI taxonomy Id: 39692
Other names: ATCC 19686, CCUG 20999, CIP 106802, DSM 43528, JCM 6367, M. parafortuitum, Mycobacterium parafortuitum, NCTC 10411, NRRL B-4035
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