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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB31683.1AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)    
Predicted Functional Partners:
ORB29690.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.905
ORB27580.1
Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.903
ORB28275.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.895
ORB30975.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.873
ORB29788.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.816
ORB29789.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.816
ORB29791.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.816
ORB30147.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.798
ORB27111.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.798
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.794
Your Current Organism:
Mycolicibacterium parafortuitum
NCBI taxonomy Id: 39692
Other names: ATCC 19686, CCUG 20999, CIP 106802, DSM 43528, JCM 6367, M. parafortuitum, Mycobacterium parafortuitum, NCTC 10411, NRRL B-4035
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.