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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB31577.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)    
Predicted Functional Partners:
ORB31578.1
Sucrase ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.955
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.952
ORB31576.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.830
ORB31645.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
ORB29947.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
ORB31575.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.502
argS
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.414
ORB26658.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.407
ORB28030.1
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.405
ORB31574.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.402
Your Current Organism:
Mycolicibacterium parafortuitum
NCBI taxonomy Id: 39692
Other names: ATCC 19686, CCUG 20999, CIP 106802, DSM 43528, JCM 6367, M. parafortuitum, Mycobacterium parafortuitum, NCTC 10411, NRRL B-4035
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.