Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORB31065.1CAAX protease family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)    
Predicted Functional Partners:
ORB31272.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
ORB31064.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB31271.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.587
ORB31066.1
Short-chain dehydrogenase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.543
ORB31067.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
ORB31062.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.403
ORB31068.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.402
Your Current Organism:
Mycolicibacterium parafortuitum
NCBI taxonomy Id: 39692
Other names: ATCC 19686, CCUG 20999, CIP 106802, DSM 43528, JCM 6367, M. parafortuitum, Mycobacterium parafortuitum, NCTC 10411, NRRL B-4035
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