Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ORB29219.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)    
Predicted Functional Partners:
ORB29217.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.776
ORB29218.1
(2Fe-2S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB29981.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.645
ORB28295.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
ORB29005.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
ORB30026.1
Gamma-butyrobetaine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
ORB28288.1
3-alpha-hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
ORB27109.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
ORB27108.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
ORB30969.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
Your Current Organism:
Mycolicibacterium parafortuitum
NCBI taxonomy Id: 39692
Other names: ATCC 19686, CCUG 20999, CIP 106802, DSM 43528, JCM 6367, M. parafortuitum, Mycobacterium parafortuitum, NCTC 10411, NRRL B-4035
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