STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORB45030.1Type VII secretion protein EccCb; Derived by automated computational analysis using gene prediction method: Protein Homology. (1233 aa)    
Predicted Functional Partners:
ORB44585.1
Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.987
ORB44586.1
Type VII secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.978
ORB44584.1
Type VII secretion-associated serine protease mycosin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
 
 
 0.974
ORB36497.1
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
ORB43797.1
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.927
ORB44587.1
WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
   
 
 0.903
ORB44588.1
WXG100 family type VII secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
   
 
 0.870
ORB43595.1
Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.858
ORB36536.1
Type VII secretion integral membrane protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.841
ORB44583.1
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.840
Your Current Organism:
Mycolicibacterium porcinum
NCBI taxonomy Id: 39693
Other names: ATCC 33776, CCUG 37674, CIP 105392, DSM 44242, JCM 6378, M. porcinum, Mycobacterium porcinum, strain E10241-1
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