Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORB40032.1LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
ORB40027.1
Crotonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB40028.1
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB40029.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB40030.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB40031.1
AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ORB40026.1
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
ORB36177.1
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.727
ORB34268.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.636
ORB34941.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.592
ORB45098.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
Your Current Organism:
Mycolicibacterium porcinum
NCBI taxonomy Id: 39693
Other names: ATCC 33776, CCUG 37674, CIP 105392, DSM 44242, JCM 6378, M. porcinum, Mycobacterium porcinum, strain E10241-1
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