STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORB38547.1PPOX class F420-dependent enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)    
Predicted Functional Partners:
ORB39479.1
Biliverdin-producing heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.830
ORB38546.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.756
ORB38543.1
precorrin-6A reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.742
ORB38545.1
Cobalamin biosynthesis bifunctional protein CbiET; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.742
ORB38544.1
Precorrin-4 C(11)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.
       0.709
ORB41240.1
Pyridoxamine-phosphate oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.551
ORB37771.1
PPOX class F420-dependent enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.551
ORB44839.1
LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.502
ORB44670.1
Nitroreductase family deazaflavin-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
ORB44866.1
CsbD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.467
Your Current Organism:
Mycolicibacterium porcinum
NCBI taxonomy Id: 39693
Other names: ATCC 33776, CCUG 37674, CIP 105392, DSM 44242, JCM 6378, M. porcinum, Mycobacterium porcinum, strain E10241-1
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