ORB38179.1 protein (Mycolicibacterium porcinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mycolicibacterium porcinum

NCBI taxonomy Id: 39693
Other names: ATCC 33776, CCUG 37674, CIP 105392, DSM 44242, JCM 6378, M. porcinum, Mycobacterium porcinum, strain E10241-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BST41_27105	ORB33687.1	BST41_27105	BST41_32855	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
BST41_27105	ORB34231.1	BST41_27105	BST41_31500	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
BST41_27105	ORB36515.1	BST41_27105	BST41_25585	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.	0.454
BST41_27105	ORB38179.1	BST41_27105	BST41_20455	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
BST41_27105	ORB38320.1	BST41_27105	BST41_20460	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
BST41_27105	ORB44649.1	BST41_27105	BST41_01720	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the group II decarboxylase family.	0.877
BST41_27105	argG	BST41_27105	BST41_18860	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.922
BST41_27105	purA	BST41_27105	BST41_06365	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.545
ORB33687.1	BST41_27105	BST41_32855	BST41_27105	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
ORB33687.1	ORB34231.1	BST41_32855	BST41_31500	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ORB33687.1	ORB35808.1	BST41_32855	BST41_27235	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.843
ORB33687.1	ORB36515.1	BST41_32855	BST41_25585	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.	0.888
ORB33687.1	ORB38179.1	BST41_32855	BST41_20455	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.873
ORB33687.1	ORB38320.1	BST41_32855	BST41_20460	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
ORB33687.1	ORB44649.1	BST41_32855	BST41_01720	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the group II decarboxylase family.	0.840
ORB33687.1	argG	BST41_32855	BST41_18860	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.861
ORB33687.1	purA	BST41_32855	BST41_06365	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.854
ORB33687.1	pyrB	BST41_32855	BST41_22660	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.860
ORB34231.1	BST41_27105	BST41_31500	BST41_27105	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate kinase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORB34231.1	ORB33687.1	BST41_31500	BST41_32855	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909