ORB38197.1 protein (Mycolicibacterium porcinum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ORB38197.1

LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Predicted Functional Partners:

ORB38156.1

0.723

ORB41418.1

0.672

ORB43495.1

0.644

ORB42875.1

0.641

ORB34958.1

0.635

ORB44881.1

0.631

ORB38960.1

0.621

ORB44611.1

0.617

ORB42510.1

0.613

ORB38196.1

0.608

Your Current Organism:

Mycolicibacterium porcinum

NCBI taxonomy Id: 39693
Other names: ATCC 33776, CCUG 37674, CIP 105392, DSM 44242, JCM 6378, M. porcinum, Mycobacterium porcinum, strain E10241-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB34958.1	ORB38197.1	BST41_29485	BST41_20555	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
ORB34958.1	ORB38960.1	BST41_29485	BST41_18205	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
ORB34958.1	ORB42510.1	BST41_29485	BST41_07365	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
ORB34958.1	ORB43495.1	BST41_29485	BST41_05040	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
ORB34958.1	ORB44881.1	BST41_29485	BST41_03080	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ORB38156.1	ORB38197.1	BST41_20325	BST41_20555	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ORB38156.1	ORB42510.1	BST41_20325	BST41_07365	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
ORB38156.1	ORB43495.1	BST41_20325	BST41_05040	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
ORB38156.1	ORB44881.1	BST41_20325	BST41_03080	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
ORB38196.1	ORB38197.1	BST41_20550	BST41_20555	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
ORB38197.1	ORB34958.1	BST41_20555	BST41_29485	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
ORB38197.1	ORB38156.1	BST41_20555	BST41_20325	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ORB38197.1	ORB38196.1	BST41_20555	BST41_20550	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
ORB38197.1	ORB38960.1	BST41_20555	BST41_18205	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
ORB38197.1	ORB41418.1	BST41_20555	BST41_12545	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
ORB38197.1	ORB42510.1	BST41_20555	BST41_07365	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
ORB38197.1	ORB42875.1	BST41_20555	BST41_08295	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
ORB38197.1	ORB43495.1	BST41_20555	BST41_05040	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ORB38197.1	ORB44611.1	BST41_20555	BST41_01455	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
ORB38197.1	ORB44881.1	BST41_20555	BST41_03080	LLM class F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coenzyme F420-0:L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631

page 1 of 3

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Databases

Co-occurrence

Textmining

Co-expression

Experiments

Fusion

© STRING Consortium 2026

Credits

Access

Info

About