Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
C807_00049 | C807_00050 | C807_00049 | C807_00050 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.951 |
C807_00049 | C807_00051 | C807_00049 | C807_00051 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.605 |
C807_00049 | C807_00605 | C807_00049 | C807_00605 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.527 |
C807_00049 | C807_00799 | C807_00049 | C807_00799 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.726 |
C807_00049 | C807_02580 | C807_00049 | C807_02580 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.768 |
C807_00049 | C807_03733 | C807_00049 | C807_03733 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.547 |
C807_00049 | rpoA | C807_00049 | C807_03828 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.592 |
C807_00049 | rpoB | C807_00049 | C807_03918 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.656 |
C807_00049 | rpoC | C807_00049 | C807_03917 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.661 |
C807_00049 | rpoZ | C807_00049 | C807_00884 | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.592 |
C807_00050 | C807_00049 | C807_00050 | C807_00049 | Hypothetical protein. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.951 |
C807_00050 | C807_00051 | C807_00050 | C807_00051 | Hypothetical protein. | Hypothetical protein. | 0.623 |
C807_00051 | C807_00049 | C807_00051 | C807_00049 | Hypothetical protein. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.605 |
C807_00051 | C807_00050 | C807_00051 | C807_00050 | Hypothetical protein. | Hypothetical protein. | 0.623 |
C807_00605 | C807_00049 | C807_00605 | C807_00049 | Hypothetical protein. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.527 |
C807_00799 | C807_00049 | C807_00799 | C807_00049 | Hypothetical protein. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.726 |
C807_02580 | C807_00049 | C807_02580 | C807_00049 | Hypothetical protein. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.768 |
C807_03733 | C807_00049 | C807_03733 | C807_00049 | Hypothetical protein. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.547 |
rpoA | C807_00049 | C807_03828 | C807_00049 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Sigma-70 family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.592 |
rpoA | rpoB | C807_03828 | C807_03918 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
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