Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C807_00152Hypothetical protein. (140 aa)    
Predicted Functional Partners:
C807_04040
Hypothetical protein.
  
     0.579
C807_00153
Hypothetical protein.
       0.554
C807_00154
Hypothetical protein.
       0.554
C807_04053
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.551
C807_03497
Hypothetical protein.
  
     0.524
C807_04052
Hypothetical protein.
  
     0.512
C807_00719
Hypothetical protein.
  
     0.478
C807_04042
Hypothetical protein.
  
     0.476
C807_03517
Hypothetical protein.
  
     0.436
C807_04049
Hypothetical protein.
  
     0.417
Your Current Organism:
Lachnospiraceae bacterium 284
NCBI taxonomy Id: 397287
Other names: L. bacterium 28-4, Lachnospiraceae bacterium 28-4
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